Files in DEIB-GECO/RGMQL
GenoMetric Query Language for R/Bioconductor
.BBSoptions
.Rbuildignore
.gitignore
DESCRIPTION
Example of workflows/EXAMPLES.Rproj
Example of workflows/GRCh38_miRNA_ACC.zip
Example of workflows/README.md
Example of workflows/Results_use_case_1/MutDistributions_events_samples.png
Example of workflows/Results_use_case_1/MutDistributions_genes_samples.jpg
Example of workflows/Results_use_case_1/top20_mutated_genes.png
Example of workflows/Results_use_case_1/top20_mutated_genes_divided_length.jpg
Example of workflows/Results_use_case_1/top20_mutated_genes_perc_patients.jpg
Example of workflows/Results_use_case_1/top20_mutated_genes_vs_length.png
Example of workflows/Results_use_case_2/CLUSTERS_TCGA_ACC.csv
Example of workflows/Results_use_case_2/Cluster_plot.png
Example of workflows/Results_use_case_2/SURVIVAL_TCGA_ACC.csv
Example of workflows/Results_use_case_2/mosaic_K4.jpg
Example of workflows/Results_use_case_2/mosaic_surv.jpg
Example of workflows/Results_use_case_2/silhouette.jpg
Example of workflows/Results_use_case_3/TF_w_0_chr21.png
Example of workflows/Results_use_case_3/high_accumulation_zones_TH_5.6_TF_acc_w_0_chr21.png
Example of workflows/To_run_use_case_2.txt
Example of workflows/use_case_1.Rmd
Example of workflows/use_case_1.html
Example of workflows/use_case_2.Rmd
Example of workflows/use_case_2.html
Example of workflows/use_case_3.Rmd
Example of workflows/use_case_3.html
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/GMQLtoGRanges.R
R/GRangesToGMQL.R
R/S3Aggregates.R
R/S3Cover-Param.R
R/S3Distal.R
R/S3Operator.R
R/S3filter_extract_param.R
R/Utils.R
R/evaluation-functions.R
R/filter-extract-function.R
R/gmql_cover.R
R/gmql_difference.R
R/gmql_extend.R
R/gmql_group.R
R/gmql_init.R
R/gmql_join.R
R/gmql_map.R
R/gmql_materialize.R
R/gmql_merge.R
R/gmql_order.R
R/gmql_project.R
R/gmql_read.R
R/gmql_select.R
R/gmql_union.R
R/onLoad.R
R/ordering-functions.R
R/show_all_metadata.R
R/web-services.R
README.md
inst/NEWS
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man/aggr-class.Rd
man/aggregate.Rd
man/arrange.Rd
man/collect.Rd
man/compile_query.Rd
man/condition_eval_func.Rd
man/cover-param-class.Rd
man/cover.Rd
man/delete_dataset.Rd
man/distal-class.Rd
man/download_dataset.Rd
man/execute.Rd
man/export_gmql.Rd
man/extend.Rd
man/filter-extract-param-class.Rd
man/filter.Rd
man/filter_and_extract.Rd
man/group_by.Rd
man/import_gmql.Rd
man/init_gmql.Rd
man/log_job.Rd
man/login_gmql.Rd
man/logout_gmql.Rd
man/map.Rd
man/merge.Rd
man/operator-class.Rd
man/ordering-class.Rd
man/read-function.Rd
man/register_gmql.Rd
man/remote_processing.Rd
man/run_query.Rd
man/sample_metadata.Rd
man/sample_region.Rd
man/save_query.Rd
man/select.Rd
man/semijoin.Rd
man/setdiff.Rd
man/show_all_metadata.Rd
man/show_dataset.Rd
man/show_jobs_list.Rd
man/show_queries_list.Rd
man/show_samples_list.Rd
man/show_schema.Rd
man/stop_gmql.Rd
man/stop_job.Rd
man/take.Rd
man/union.Rd
man/upload_dataset.Rd
vignettes/RGMQL-vignette.R
vignettes/RGMQL-vignette.Rmd
vignettes/RGMQL-vignette.fdb_latexmk
vignettes/RGMQL-vignette.fls
vignettes/RGMQL-vignette.html
vignettes/american-medical-association-no-et-al.csl
vignettes/american-medical-association.csl
vignettes/bibliography.bib
vignettes/multi_metadata.png
