import_gmql: Create GRangesList from GMQL dataset

In DEIB-GECO/RGMQL: GenoMetric Query Language for R/Bioconductor

Create GRangesList from GMQL dataset

Description

It creates a GRangesList from GMQL samples in dataset. It reads sample files in GTF or GDM/tab-delimited format.

Usage

import_gmql(dataset_path, is_gtf)

Arguments

dataset_path	string with GMQL dataset folder path
is_gtf	logical value indicating if dataset samples are in GTF format; if TRUE and dataset does not contain GTF samples, an error occurs

Value

GRangesList containing all GMQL samples in dataset

See Also

export_gmql

Examples

## This statement defines the path to the subdirectory "example" of the 
## package "RGMQL" and imports as GRangesList the contained GMQL dataset

test_path <- system.file("example", "DATASET", package = "RGMQL")
grl = import_gmql(test_path, TRUE)

DEIB-GECO/RGMQL documentation built on Feb. 17, 2024, 10:39 p.m.