Ishikawa: Contains genomic regions of transcription factors at the...
In DEIB-GECO/TFHAZ: Transcription Factor High Accumulation Zones
Ishikawa R Documentation
Contains genomic regions of transcription factors at the ranges side
and the name of the transcription factors at the metadata side.
Description
Ishikawa is a Large GRanges object with 283,009 ranges and 1 metadata
column. Each range represents the coordinates of a TF binding region while
metadata column indicates the name of the TF.
Usage
data("Ishikawa")
Format
An object of class "GRanges"
Details
The dataset is obtained from computation of ENCODE ChIP-Seq data of the
localization of transcription factor binding sites of the Ishikawa cell line.
The data have been processed and extracted with GMQL (GenoMetric Query Language
http://www.bioinformatics.deib.polimi.it/ GMQL/).
Value
None, the function is invoked for its side effect.
Examples
# loading dataset
data("Ishikawa")
head(Ishikawa)
DEIB-GECO/TFHAZ documentation built on July 29, 2023, 5:45 p.m.
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| Ishikawa | R Documentation |
Contains genomic regions of transcription factors at the ranges side and the name of the transcription factors at the metadata side.
Description
Ishikawa is a Large GRanges object with 283,009 ranges and 1 metadata column. Each range represents the coordinates of a TF binding region while metadata column indicates the name of the TF.
Usage
data("Ishikawa")Format
An object of class "GRanges"
Details
The dataset is obtained from computation of ENCODE ChIP-Seq data of the localization of transcription factor binding sites of the Ishikawa cell line. The data have been processed and extracted with GMQL (GenoMetric Query Language http://www.bioinformatics.deib.polimi.it/ GMQL/).
Value
None, the function is invoked for its side effect.
Examples
# loading dataset
data("Ishikawa")
head(Ishikawa)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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