plot_n_zones: Plots the number of dense zones for each threshold value.

In DEIB-GECO/TFHAZ: Transcription Factor High Accumulation Zones

Plots the number of dense zones for each threshold value.

Description

For each accumulation threshold value considered, this function shows the number of dense zones found (e.g., with the dense_zones function). It also plots in red color the point of the graph with maximum slope change (maximum second derivative).

Usage

plot_n_zones(zones, chr = NULL)

Arguments

zones	a list of eight elements, as the output of the dense_zones function.
chr	optional argument, needed if the input was found with chr = "all"; a string or a vector containing strings with the name of the chromosome(s) (e.g., "chr1" or c("chr1", "chr4")) to be considered

Value

None, the function is invoked for its side effect.

Examples

# loading data
data("data_man")
# TF_dense_w_0 is in the data_man collection of datasets
# plot number of zones
plot_n_zones(TF_dense_w_0)

DEIB-GECO/TFHAZ documentation built on July 29, 2023, 5:45 p.m.