UPDATE.md

In DIDSR/HTT: Data, scripts, and functions of the High-Throughput Truthing project

Version 2.0.0

05/06/2022

Update the data with the Expert Panel annotations and the R Markdown for this manuscript:

• Garcia et al. (2022 - Submitted). "Development of Training Materials for Pathologists to Provide Machine Learning Validation Data of Tumor-Infiltrating Lymphocytes in Breast Cancer," Cancers.

Changes include:

1. New modalityID = "camic-expert" that denotes the annotations from our Expert Panel.
2. Two new batches, batch = "FDA-HTT-Train001" and "FDA-HTT-Train002". These batches contain the ROIs scored by the Expert Panel.
3. New readerID of the experts appear as “expert****”
4. The R Markdown used to create the figures in the Cancers paper and a copy of the PDF output are available in the folder inst/extra/20220506-GarciaCancersPaper to simplify reproducibility of the paper in case some data formatting changes in the current pilotHTT data frame.

Version 1.0.0

Creation of the HTT Project's Pilot Study annotation dataset.

DIDSR/HTT documentation built on Aug. 13, 2022, 3:37 p.m.