fitthemodel: Function to fit the model.

In DanielBonnery/BigSyn: X

Description

Function to fit the model.

Usage

fitthemodel(
  Sparameters_i,
  fitmodelsavepath,
  TtableANAto0,
  redocomputationsevenifexists = FALSE,
  treeplotsavefolder = NULL
)

Arguments

Sparameters_i	an element of the list output from Sparameters.default.f
fitmodelsavepath	a folder path. Results will either be read from or stored in this folder. If the file exists, by default it is not replaced.
TtableANAto0	a table containing the predictors without NAs as well as the outcome

Value

a list.

Examples

#Load the data
data(TtableA,package="BigSyn")
#define parameters
Sparameters<-Sparameters.default.f(ref.table=TtableA)
Sparameters_i<-Sparameters[[53]]; 
fitmodelsavepath<-NULL; 
TtableANAto0<-NAto0(TtableA);
redocomputationsevenifexists<-FALSE
treeplotsavefolder=tempdir()
#fit the model:
fitthemodel(Sparameters_i,fitmodelsavepath = NULL,TtableANAto0 = TtableANAto0,
            treeplotsavefolder=tempdir())
Sparameters_i<-Sparameters[["AA.present_La_La_Lrn1"]]; 
treeplotsavefolder=tempdir()
fitthemodel(Sparameters_i,NULL,TtableANAto0,treeplotsavefolder=tempdir())

DanielBonnery/BigSyn documentation built on June 28, 2020, 7:18 p.m.