Man pages for DanielSprockett/reltools
Microbiome Amplicon Analysis and Visualization
| add_alpha_diversity | Adds alpha diversity metrics to a 'phyloseq' object. |
| add_lowest_rank | Adds 'lowest_rank' to a phyloseq object |
| add_mdi | Adds Microbial Dysbiosis Index to a phyloseq object |
| add_nsaf | Normalize protein abundances by 'NSAF' |
| fit_sncm | Fits 'sncm' to an OTU table |
| make_distance_df | Creates a data.frame of pairwise distances from a 'phyloseq'... |
| merge_protein_replicates | Merge Protein Replicates |
| plot_ordered_bar | bar plot ordered across samples |
| plot_sncm_fit | plots the fit of an OTU table to 'sncm' |
| reltools | reltools: Microbiome Amplicon Analysis and Visualization. |
| save_fasta | outputs a FASTA file from a phyloseq object |
| theme_relman | A custom theme for the Relman Lab |
