plot_sncm_fit: plots the fit of an OTU table to 'sncm'
In DanielSprockett/reltools: Microbiome Amplicon Analysis and Visualization

Description Usage Arguments Value See Also Examples

View source: R/modeling_tools.R

This funtion plots the output from fit_sncm

1	plot_sncm_fit(spp.out, fill = NULL, title = NULL)

`spp.out`	the output from `fit_sncm`
`fill`	(optional) can either be set to fit_class to color by prediction (default), or by a taxonomic level available in `rank_names`
`title`	(optional) the title of the plot.

This function returns a plot of the fit of the OTU table to sncm

fit_sncm

spp <- otu_table(ps)@.Data
spp.out <- fit_sncm(spp, pool=NULL, taxon=data.frame(tax_table(ps)))
p <- plot_sncm_fit(spp.out)
p <- plot_sncm_fit(spp.out = spp.out, fill_var = "fit_class", title_var = "Fit to Neutral Model")