calibration_surro: calibration_surro

In DanieleBizzarri/MiMIR: Metabolomics-Based Models for Imputing Risk

calibration_surro

Description

helper function that calculates the Platt Calibrations for all the surrogates

Usage

calibration_surro(
  bin_phenotypes,
  surrogates,
  bin_names,
  bin_pheno_available,
  pl = FALSE,
  nbins = 10
)

Arguments

bin_phenotypes	data.frame with binary phenotypes resulting form binarize_all_pheno
surrogates	data.frame with surrogates resulting from calculate_surrogate_scores
bin_names	string with the names of the binarize clinical variables
bin_pheno_available	string with the names of the binarize clinical variables available in the dataset
pl	TRUE/FALSE. If TRUE creates the calibration plots
nbins	number of bins for the plots

Value

list with the calibrated surrogates

See Also

plattCalibration

DanieleBizzarri/MiMIR documentation built on March 1, 2023, 11:02 p.m.