kapmeier_scores: kapmeier_scores

In DanieleBizzarri/MiMIR: Metabolomics-Based Models for Imputing Risk

kapmeier_scores

Description

#' Function that creates a Kaplan Meier comparing first and last tertile of a metabolic score

Usage

kapmeier_scores(predictors, pheno, score, Eventname = "Event")

Arguments

predictors	The data.frame containing the predictors
pheno	The data.frame containing the phenotypes
score	a character string indicating which predictor to use
Eventname	a character string with the name of the event to print on the plot

Value

plotly with a Kaplan Meier comparing first and last tertile of a metabolic score

Examples

require(MiMIR)
require(plotly)
require(survminer)
require(ggfortify)
require(ggplot2)

#load the dataset
metabolic_measures <- synthetic_metabolic_dataset
phenotypes <- synthetic_phenotypic_dataset

#Compute the mortality score
mortScore<-comp.mort_score(metabolic_measures,quiet=TRUE)

#Plot a Kaplan Meier
kapmeier_scores(predictors=mortScore, pheno=phenotypes, score="mortScore")

DanieleBizzarri/MiMIR documentation built on March 1, 2023, 11:02 p.m.