getemodbiodata: Get data from the EMODnet Biology WFS
In Daphnisd/REMODBio: EMODnet Biology data download package

Description Usage Arguments Examples

View source: R/getemodbiodata.R

This function allows you to download data using aphiaID, dasid or using an geoserverURL you get from the EMODnet Biology toolbox

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getemodbiodata(geourl = NA, dasid = NA, aphiaid = NA, mrgid = NA,
  speciesgroup = NA, startyear = "1850", endyear = NA,
  type = "full")

`geourl`	optional parameter, in case you use the geoserverURL obtained through the EMODnet Biology toolbox http://www.emodnet-biology.eu/toolbox/en/download/occurrence/explore
`dasid`	optional parameter, in case you want to download a single dataset. Use the dasid obtained through the http://www.emodnet-biology.eu/data-catalog (the id from the url)
`aphiaid`	optional parameter, in case you want to download data from a single taxon. Uses the id obtained throug ww.marinespecies.org
`mrgid`	optional parameter, in case you want to download data for a specific region. Use mrgid from marineregions.org or type View(IHOareas) to get an overview of the available IHO areas.
`speciesgroup`	optional parameter, in case you want to download data for a functional group. Values are "Algae" , "Angiosperms", "Benthos", "Birds", "Fish", "Mammals", "phytoplankton", Reptiles", "zooplankton" (Case sensitive)
`startyear`	optional parameter, the earliest year the collected specimen might have been collected
`endyear`	optional parameter, the latest year the collected specimen might have been collected
`type`	indicates if you want a basic download "basic" (only date, coordinates and taxon) or you want all data "full" returned from the WFS

getemodbiodata(dasid = "4662")
getemodbiodata(aphiaid = "141433")
getemodbiodata(speciesgroup = "Angiosperms")
getemodbiodata(dasid = c("1884","618", "5780" ), aphiaid = "2036")
getemodbiodata(dasid = "1884", type ="basic")
getemodbiodata(mrgid=c("5670","3315"))
getemodbiodata(geourl = "http://geo.vliz.be/geoserver/wfs/ows?service=WFS&version=1.1.0&request=GetFeature&typeName=Dataportal%3Aeurobis-obisenv&resultType=results&viewParams=where%3Adatasetid+IN+%285885%29%3Bcontext%3A0100&outputFormat=csv")