Files in DarioS/ClassifyR

A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

.Rbuildignore

.gitignore

ClassifyR.Rproj

DESCRIPTION

NAMESPACE

R/ROCplot.R R/available.R R/calcPerformance.R R/classes.R R/constants.R R/crissCrossValidate.R R/crossValidate.R R/data.R R/distribution.R R/edgesToHubNetworks.R R/featureSetSummary.R R/getLocationsAndScales.R R/interactorDifferences.R R/interfaceClassify.R R/interfaceCoxPH.R R/interfaceCoxnet.R R/interfaceDLDA.R R/interfaceFisherDiscriminant.R R/interfaceGLM.R R/interfaceKNN.R R/interfaceKTSPclassifier.R R/interfaceMerge.R R/interfaceMixModels.R R/interfaceNSC.R R/interfaceNaiveBayesKernel.R R/interfacePCA.R R/interfacePenalisedGLM.R R/interfacePrevalidation.R R/interfaceRandomForest.R R/interfaceRandomForestSurvival.R R/interfaceSVM.R R/interfaceXGB.R R/performancePlot.R R/plotFeatureClasses.R R/precisionPathways.R R/prepareData.R R/previousSelection.R R/previousTrained.R R/randomSelection.R R/rankingBartlett.R R/rankingCoxPH.R R/rankingDMD.R R/rankingDifferentMeans.R R/rankingEdgeR.R R/rankingKolmogorovSmirnov.R R/rankingKullbackLeibler.R R/rankingLevene.R R/rankingLikelihoodRatio.R R/rankingLimma.R R/rankingPairsDifferences.R R/rankingPlot.R R/runTest.R R/runTests.R R/samplesMetricMap.R R/selectMulti.R R/selectionPlot.R R/simpleParams.R R/subtractFromLocation.R R/utilities.R README.md

_pkgdown.yml

data/HuRI.RData

data/METABRICclinical.RData

data/asthma.RData

docs/404.html

docs/articles/ClassifyR.html

docs/articles/ClassifyR_files/accessible-code-block-0.0.1/empty-anchor.js

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docs/extra.css

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docs/pkgdown.js

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docs/reference/ClassifyResult-class.html

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docs/reference/colCoxTests.html

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docs/search.json

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inst/CITATION

inst/NEWS.Rd

man/ClassifyResult-class.Rd man/CrossValParams-class.Rd man/FeatureSetCollection.Rd man/HuRI.Rd man/METABRICclinical.Rd man/ModellingParams-class.Rd man/PredictParams-class.Rd man/ROCplot.Rd man/SelectParams-class.Rd man/TrainParams-class.Rd man/TransformParams-class.Rd man/asthma.Rd man/available.Rd man/calcPerformance.Rd man/colCoxTests.Rd man/crissCrossPlot.Rd man/crissCrossValidate.Rd man/crossValidate.Rd man/distribution.Rd man/edgesToHubNetworks.Rd man/featureSetSummary.Rd

man/figures/ClassifyRsticker.png

man/interactorDifferences.Rd man/performancePlot.Rd man/plotFeatureClasses.Rd man/precisionPathways.Rd man/precisionPathwaysEvaluations.Rd man/prepareData.Rd man/rankingPlot.Rd man/runTest.Rd man/runTests.Rd man/samplesMetricMap.Rd man/selectionPlot.Rd

pkgdown/extra.css

src/Makevars

src/coxformatrices.cpp

src/survS.h

src/survproto.h

vignettes/ClassifyR.Rmd vignettes/DevelopersGuide.Rmd

vignettes/images/Cindex.png

vignettes/images/ClassifyRprocedure.png

vignettes/images/accessors.png

vignettes/images/balancedAccuracy.png

vignettes/images/leave2out.png

vignettes/images/microMacro.png

vignettes/images/permuteFold.png

vignettes/images/permutePercentSplit.png

vignettes/incorporateNew.Rmd vignettes/introduction.Rmd vignettes/multiViewMethods.Rmd vignettes/performanceEvaluation.Rmd vignettes/presets.Rmd

vignettes/style.css

vignettes/survival.Rmd

DarioS/ClassifyR documentation built on May 7, 2024, 2:24 a.m.