GenerateSignMatrix: Generate sign matrix

In DavidGarciaCallejas/DGC: David Garcia-Callejas' functions

Description

Generate sign matrix

Usage

GenerateSignMatrix(tl.results, connectance = NULL, interaction.probs = NULL,
  within.type.prob, verbose = F)

Arguments

tl.results	community dataframe from AssignTrophicLevel
connectance	C = L/Sp, where Sp is the potential connectance considering the assumptions. it also accepts a vector of specific connectances, in which case no interaction probabilities are used
interaction.probs	dataframe with 5 rows: competition, amensalism, antagonism, mutualism, commensalism and a column "prob" with the percentage for each interaction
within.type.prob	data frame with columns 'interaction type', 'tl.category' and 'prob' where interaction type is 'amensalism','antagonism', 'commensalism, 'competition' or 'mutualism'; tl.category is 'same', 'adjacent', or 'other'. An example is included in the package. and prob is the probability of occurrence of each combination of interaction and trophic levels of the species involved.
verbose	detailed output

Value

Integer matrix of size NxN

DavidGarciaCallejas/DGC documentation built on May 6, 2019, 1:54 p.m.