codeToMinor: Code to the Minor Allele
In DavisBrian/seqtools: Sequence Analysis Tools
Description
Usage
Arguments
Details
Value
Description
This function ensures the genotype is coded to the minor allele.
Usage
1
codeToMinor(Z)
Arguments
Z
A genotype matrix (dosage matrix) - rows correspond to
individuals and columns correspond to SNPs. Use 'NA' for missing values.
Details
This function ensures the minor allele frequency is < 0.5. Note
this assumes the genotype matrix is coded 0/1/2.
If Z is not a matrix it will be coerced with as.matrix.
Value
a recoded genotype matrix (dosage matrix)
DavisBrian/seqtools documentation built on May 6, 2019, 1:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
Description
This function ensures the genotype is coded to the minor allele.
Usage
1 | codeToMinor(Z)
|
Arguments
Z |
A genotype matrix (dosage matrix) - rows correspond to individuals and columns correspond to SNPs. Use 'NA' for missing values. |
Details
This function ensures the minor allele frequency is < 0.5. Note this assumes the genotype matrix is coded 0/1/2.
If Z is not a matrix it will be coerced with as.matrix.
Value
a recoded genotype matrix (dosage matrix)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.