seqtools: seqtools: A collection of tools for sequence analysis.

In DavisBrian/seqtools: Sequence Analysis Tools

Description

The seqtools package is a collection of tools to facilitate sequence analysis. It provides a common interface for working with phenotype data, genotype data, and snp information. Also, wrappers for common sequence analysis test such as seqMeta, firth, linear regression, logistic regression, survival analysis are provided.

Firth functions

• burdenFirth: runs the burden Firth test

• codeToMinor: ensures the genotype matrix is coded to the minor allele

• imputeToMean: imputes missing genotype values to the mean dosage

• singsnpFirth: runs the single snp Firth test

DavisBrian/seqtools documentation built on May 6, 2019, 1:56 p.m.