View source: R/se_conversion.R
asDGEList | R Documentation |
This function converts a SummarizedExperiment object to a DGEList object to enhance differential expression analysis using the edgeR package.
asDGEList(se, assay_name = "counts")
se |
a SummarizedExperiment object. |
assay_name |
a character, specifying the assay to retrieve. |
a DGEList object
library(ExperimentHub)
eh = ExperimentHub()
query(eh, 'emtdata')
cursons2018_se = eh[['EH5440']]
cursons2018_dge = asDGEList(cursons2018_se)
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