CPD: CPD
In DavisLaboratory/msImpute: Imputation of label-free mass spectrometry peptides
CPD R Documentation
CPD
Description
Spearman correlation between pairwise distances in the original data and imputed data.
CPD quantifies preservation of the global structure after imputation.
Requires complete datasets - for developers/use in benchmark studies only.
Usage
CPD(xorigin, ximputed)
Arguments
xorigin
numeric matrix. The original log-intensity data. Can not contain missing values.
ximputed
numeric matrix. The imputed log-intensity data. Can not contain missing values.
Value
numeric
Examples
data(pxd007959)
y <- pxd007959$y
y <- y[complete.cases(y),]
# for demonstration we use same y for xorigin and ximputed
CPD(y, y)
DavisLaboratory/msImpute documentation built on Jan. 5, 2024, 3:50 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| CPD | R Documentation |
CPD
Description
Spearman correlation between pairwise distances in the original data and imputed data. CPD quantifies preservation of the global structure after imputation. Requires complete datasets - for developers/use in benchmark studies only.
Usage
CPD(xorigin, ximputed)
Arguments
xorigin |
numeric matrix. The original log-intensity data. Can not contain missing values. |
ximputed |
numeric matrix. The imputed log-intensity data. Can not contain missing values. |
Value
numeric
Examples
data(pxd007959)
y <- pxd007959$y
y <- y[complete.cases(y),]
# for demonstration we use same y for xorigin and ximputed
CPD(y, y)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.