pxd010943: SWATH-MS Analysis of Gfi1-mutant bone marrow neutrophils
In DavisLaboratory/msImpute: Imputation of label-free mass spectrometry peptides
pxd010943 R Documentation
SWATH-MS Analysis of Gfi1-mutant bone marrow neutrophils
Description
Contains Peak Area for peptides in PXD010943.
This study investigates the proteomic alterations in bone marrow neutrophils isolated from 5-8 week old Gfi1+/-, Gfi1K403R/-,
Gfi1R412X/-, and Gfi1R412X/R412X mice using the SWATH-MS technique. This dataset consists of 13 SWATH-DIA runs on a TripleTOF 5600 plus (SCIEX).
Rows are peptides. Charge state variations are treated as distinct peptide species. Peptides with more than 4 observed intensity values are retained.
The peptide.txt and experimentalDesignTemplate files can be downloaded as RDS object from https://github.com/soroorh/proteomicscasestudies.
Code for data processing is provided in package vignette.
Usage
pxd010943
Format
A matrix
Source
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD010943
References
Muench DE, Olsson A, Ferchen K, Pham G, Serafin RA, Chutipongtanate S, Dwivedi P, Song B, Hay S, Chetal K, Trump-Durbin LR, Mookerjee-Basu J, Zhang K, Yu JC, Lutzko C, Myers KC, Nazor KL, Greis KD, Kappes DJ, Way SS, Salomonis N, Grimes HL, Mouse models of neutropenia reveal progenitor-stage-specific defects. Nature, 582(7810):109-114(2020)
DavisLaboratory/msImpute documentation built on Jan. 5, 2024, 3:50 a.m.
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| pxd010943 | R Documentation |
SWATH-MS Analysis of Gfi1-mutant bone marrow neutrophils
Description
Contains Peak Area for peptides in PXD010943. This study investigates the proteomic alterations in bone marrow neutrophils isolated from 5-8 week old Gfi1+/-, Gfi1K403R/-, Gfi1R412X/-, and Gfi1R412X/R412X mice using the SWATH-MS technique. This dataset consists of 13 SWATH-DIA runs on a TripleTOF 5600 plus (SCIEX). Rows are peptides. Charge state variations are treated as distinct peptide species. Peptides with more than 4 observed intensity values are retained. The peptide.txt and experimentalDesignTemplate files can be downloaded as RDS object from https://github.com/soroorh/proteomicscasestudies. Code for data processing is provided in package vignette.
Usage
pxd010943
Format
A matrix
Source
http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD010943
References
Muench DE, Olsson A, Ferchen K, Pham G, Serafin RA, Chutipongtanate S, Dwivedi P, Song B, Hay S, Chetal K, Trump-Durbin LR, Mookerjee-Basu J, Zhang K, Yu JC, Lutzko C, Myers KC, Nazor KL, Greis KD, Kappes DJ, Way SS, Salomonis N, Grimes HL, Mouse models of neutropenia reveal progenitor-stage-specific defects. Nature, 582(7810):109-114(2020)
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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