API for DavisLaboratory/oppar
Outlier profile and pathway analysis in R
| Global functions | |
|---|---|
| $,OPPARList-method | Man page |
| .computeGeneSetsOverlap | Source code |
| .gsva | Source code |
| .isPackageLoaded | Source code |
| .onLoad | Source code |
| OPPARList-class | Man page |
| bcm | Man page |
| combinez | Source code |
| compute.gene.density | Source code |
| compute.geneset.es | Source code |
| compute.gset.overlap.score | Source code |
| compute.null.enrichment | Source code |
| eset | Man page |
| getOutlier | Source code |
| getSampleOutlier | Man page |
| getSampleOutlier,OPPARList,nuchar-method | Man page |
| getSampleOutlier,matrix,nuchar-method | Man page |
| getSubtypeProbes | Man page |
| getSubtypeProbes,OPPARList,nuchar-method | Man page |
| getSubtypeProbes,matrix,nuchar-method | Man page |
| get_q | Source code |
| gsva | Man page |
| gsva,ExpressionSet,GeneSetCollection-method | Man page |
| gsva,ExpressionSet,list-method | Man page |
| gsva,matrix,GeneSetCollection-method | Man page |
| gsva,matrix,list-method | Man page |
| ks_test_Rcode | Source code |
| ks_test_m | Source code |
| load.gmt.data | Source code |
| maupin | Man page |
| opa | Man page |
| opa,ExpressionSet-method | Man page |
| opa,matrix-method | Man page |
| oppar | Man page |
| oppar-package | Man page |
| plage | Source code |
| rightsingularsvdvectorgset | Source code |
| rndWalk | Source code |
| show,OPPARList-method | Man page |
| ssgsea | Source code |
| zscore | Source code |
