oppar: oppar: A package for outlier profile and pathway analysis.
In DavisLaboratory/oppar: Outlier profile and pathway analysis in R
Description
opa
getSampleOutlier
getSubtypeProbes
Description
The oppar package provides 3 main function for outlier profile analysis:
opa, getSampleOutlier and getSubtypeProbes, and 1 function for pathway and
gene set enrichment analysis, based on gsva function implemented in the GSVA package
opa
calculates the outlier profile matrix, using the method proposed in Wang et al. (2012) paper
getSampleOutlier
extracts outlier profile for individual samples
getSubtypeProbes
extracts outlier profile for a group of related samples, such as subtypes
DavisLaboratory/oppar documentation built on May 6, 2019, 1:56 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description opa getSampleOutlier getSubtypeProbes
Description
The oppar package provides 3 main function for outlier profile analysis: opa, getSampleOutlier and getSubtypeProbes, and 1 function for pathway and gene set enrichment analysis, based on gsva function implemented in the GSVA package
opa
calculates the outlier profile matrix, using the method proposed in Wang et al. (2012) paper
getSampleOutlier
extracts outlier profile for individual samples
getSubtypeProbes
extracts outlier profile for a group of related samples, such as subtypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.