bcb420goa: R Package Template

#Sources:
# http://geneontology.org/page/ontology-documentation
# http://geneontology.org/page/go-annotations
#
# GOA humman metadata (gaf default file name)
human.gaf.filename <- "goa_human.gaf.gz"

goa.human.deafult.url <-
  "http://geneontology.org/gene-associations/goa_human.gaf.gz"

column.names <- c("DB", "DB_Object_ID", "DB_Object_Symbol", "Qualifier",
                  "GO_ID", "DB_Reference", "Evidence_Code", "With_or_From",
                  "Aspect", "DB_Object_Name", "DB_Object_Synonym",
                  "DB_Object_Type", "Taxon", "Date", "Assigned_By",
                  "Annotation_Extension", "Gene_Product_Form_ID")

# ontology default filename - metadata
ontology.filename <- "go-basic.obo"
ontology.filename.default.url <-
  "http://purl.obolibrary.org/obo/go/go-basic.obo"