DeveauP/QuantumClone: Clustering Mutations using High Throughput Sequencing (HTS) Data

Using HTS data, clusters mutations in order to recreate putative clones from the data provided. It requires genotype at the location of the variant as well as the depth of coverage and number of reads supporting the mutation. Additional information may be provided, such as the contamination in the tumor sample. This package also provides a function QuantumCat() which simulates data obtained from tumor sequencing.

Getting started

Package details

Maintainer
LicenseGPL-2
Version1.0.0.8
URL https://github.com/DeveauP/QuantumClone
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("DeveauP/QuantumClone")
DeveauP/QuantumClone documentation built on March 17, 2019, 5:54 p.m.