Tree_generation: Phylogenetic tree
In DeveauP/QuantumClone: Clustering Mutations using High Throughput Sequencing (HTS) Data
Description
Usage
Arguments
Value
View source: R/Phylogeny_tree.R
Description
Generates a list of possible trees based on the cellularity of each clone, and the spatial and temporal distribution of the samples.
Assumption is made the different clones are on different lines of the matrix
Usage
1
Tree_generation(Clone_cellularities, timepoints = NULL)
Arguments
Clone_cellularities
A dataframe with cellularities (ranging from 0 to 1) of each clone (rows) in each sample (columns)
timepoints
A numeric vector giving the spatial and/or temporal distribution of the samples
Value
list of putative phylogenetic trees
DeveauP/QuantumClone documentation built on Oct. 29, 2021, 8:56 a.m.
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Description Usage Arguments Value
View source: R/Phylogeny_tree.R
Description
Generates a list of possible trees based on the cellularity of each clone, and the spatial and temporal distribution of the samples. Assumption is made the different clones are on different lines of the matrix
Usage
1 | Tree_generation(Clone_cellularities, timepoints = NULL)
|
Arguments
Clone_cellularities |
A dataframe with cellularities (ranging from 0 to 1) of each clone (rows) in each sample (columns) |
timepoints |
A numeric vector giving the spatial and/or temporal distribution of the samples |
Value
list of putative phylogenetic trees
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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