API for DeveauP/QuantumClone
Clustering Mutations using High Throughput Sequencing (HTS) Data
| Global functions | |
|---|---|
| BIC_criterion | Source code |
| BIC_criterion_FLASH | Source code |
| Cellular_preclustering | Man page Source code |
| CellularitiesFromFreq | Source code |
| Cluster_plot_from_cell | Source code |
| Compute.adj.fact | Source code |
| Compute_NMI | Man page Source code |
| Compute_objective | Source code |
| Create_prior_cutTree | Man page Source code |
| EM.algo | Source code |
| EM_clustering | Source code |
| FLASH_main | Source code |
| FlashQC | Man page Source code |
| From_freq_to_cell | Source code |
| FullEM | Source code |
| Input_Example | Man page |
| MajorityVote | Source code |
| NMI_cutree | Man page Source code |
| One_D_plot | Source code |
| One_step_clustering | Man page Source code |
| Patient_schrodinger_cellularities | Source code |
| Precision_Recall | Man page Source code |
| ProbDistMatrix | Man page Source code |
| Probability.to.belong.to.clone | Man page Source code |
| QC_output | Man page |
| QuantumCat | Man page Source code |
| QuantumClone | Man page Source code |
| Tidy_output | Source code |
| Tree | Man page |
| Tree_generation | Man page Source code |
| add.to.list | Source code |
| add_leaf_list | Source code |
| check_leaf | Source code |
| check_split | Source code |
| create_priors | Source code |
| e.step | Source code |
| eval.fik | Source code |
| eval.fik.m | Source code |
| evolution_plot | Man page Source code |
| filter_on_fik | Source code |
| find_x_position | Source code |
| grzero | Source code |
| hard.clustering | Source code |
| is_included | Source code |
| list_prod | Source code |
| longueur | Source code |
| m.step | Source code |
| manual_plot_trees | Man page Source code |
| multiplot_trees | Man page Source code |
| parallelEM | Source code |
| phylo_tree_generation | Source code |
| plot_QC_out | Man page Source code |
| plot_cell_from_Return_out | Source code |
| plot_with_margins_densities | Man page Source code |
| strcount | Source code |
| update_probs | Source code |
| zscore | Man page Source code |
