Man pages for DeveauP/QuantumClone
Clustering Mutations using High Throughput Sequencing (HTS) Data
| Cellular_preclustering | Preclustering method |
| Compute_NMI | Normalized Mutual Information |
| Create_prior_cutTree | Create priors from hierarchical clustering |
| evolution_plot | Evolution plot |
| FlashQC | Flash QuantumClone |
| Input_Example | Example generated by QuantumCat |
| manual_plot_trees | Plot tree |
| multiplot_trees | Plots multiple trees |
| NMI_cutree | NMI |
| One_step_clustering | Cellularity clustering |
| plot_QC_out | Plot QC_output |
| plot_with_margins_densities | Plot with margin densities |
| Precision_Recall | Precision |
| Probability.to.belong.to.clone | Probability |
| ProbDistMatrix | Distance |
| QC_output | Example of output generated by clustering of Input_Example |
| QuantumCat | Data generation |
| QuantumClone | One step analysis function |
| Tree | Example of output by Tree_generation |
| Tree_generation | Phylogenetic tree |
| zscore | Z-score |
