README.md

In DiffCircaPipeline/Rpackage: An R package for DiffCircaPipeline: A framework for multifaceted characterization of differential rhythmicity

DiffCircaPipeline R package

Notice

Currently the github repository is being editted for submission for Bioconductor. Some functions may be removed. Please download at https://zenodo.org/record/7559084 for the version that produces the same result for the Bioinformatics paper.

Install from github

• In R console

if (!require("devtools", quietly = TRUE))
    install.packages("devtools")
#install dependencies
devtools::install_github("diffCircadian/diffCircadian") 
devtools::install_github("ricardo-bion/ggradar") 
devtools::install_github("Caleb-Huo/differentialR2") 
devtools::install_github("Caleb-Huo/AWFisher")
if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")

#install DiffCircaPipeline
devtools::install_github("DiffCircaPipeline/DiffCircaPipeline")
# devtools::install_github("DiffCircaPipeline/DiffCircaPipeline@main") #run this if the above line does not work. 

Tutorial

The tutorial can be found at https://diffcircapipeline.github.io.

DiffCircaPipeline/Rpackage documentation built on March 17, 2023, 7:32 a.m.