SummarizeDR: Summary of Differential Rhythmicity Tests Summarize...

In DiffCircaPipeline/Rpackage: An R package for DiffCircaPipeline: A framework for multifaceted characterization of differential rhythmicity

Summary of Differential Rhythmicity Tests Summarize differential rhythmicity Tests results into a table.

Description

Summary of Differential Rhythmicity Tests Summarize differential rhythmicity Tests results into a table.

Usage

SummarizeDR(result, test = "DRF", type = "p-value", val = 0.05, out = "long")

Arguments

result	a list of vectors, usually p-values. Each vector will be summarized with a different cutoff.
test	a vector of strings indicating the name of tests.
type	a vector of strings indicating the type of the results.
val	The cutoff used to dichotomize the result vectors.
out	Should the output table be "long" or "wide"?

Value

a table of summarized results

Examples

x = DCP_sim_data(ngene=1000, nsample=30, A1=c(1, 3), A2=c(1, 3),
phase1=c(0, pi/4), phase2=c(pi/4, pi/2),
M1=c(4, 6), M2=c(4, 6), sigma1=1, sigma2=1)
rhythm.res = DCP_Rhythmicity(x1 = x[[1]], x2 = x[[2]])
rhythm.diffR2 = DCP_DiffPar(rhythm.res)
SummarizeDR(result = list(rhythm.diffR2$p.R2, rhythm.diffR2$p.R2, rhythm.diffR2$q.R2),
test = c(rep("DRF", 2), "DRF"),
type = c(rep("p-value", 2), "q-value"),
val = c(0.1, 0.05, 0.4), "long")

DiffCircaPipeline/Rpackage documentation built on March 17, 2023, 7:32 a.m.