f.integrate_extracted: function to integrate peaks from 3d chromato array

Description Usage Arguments Author(s) Examples

View source: R/f.integrate_extracted.R

Description

function to integrate peaks from 3d chromato array

Usage

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f.integrate_extracted(data, channel, negatif = F, correct.baseline = F,
  allign = F, start, end, wm = 50, ws = 5, plotting = F)

Arguments

data

an array as returned by the function f.eat.image

channel

numeric for the channel to use (1 for red, 2 for green and 3 for blue)

negatif

apply a transformation to put the data in negatif, needed for white light pictures and for some extracted featuress from the network

correct.baseline

use or not the rolling ball algorithm to correct the baseline

start

starting pixel index

end

stopping pixel index

wm

Width of local window for minimization/maximization

ws

Width of local window for smoothing

plotting

should a plot be display to check the integration

align

boolean, use or not ptw to align the peak to the first sample

...

Arguments to be passed to methods

Author(s)

Dimitri Fichou

Examples

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data <- f.read.image(source='www/rTLC_demopicture.JPG',height=128)
## incoming

DimitriF/DLC documentation built on March 21, 2018, 8:49 p.m.