f.integrate_extracted: function to integrate peaks from 3d chromato array

In DimitriF/DLC: Deep Layer Chromatography

Description

function to integrate peaks from 3d chromato array

Usage

f.integrate_extracted(data, channel, negatif = F, correct.baseline = F,
  allign = F, start, end, wm = 50, ws = 5, plotting = F)

Arguments

data	an array as returned by the function f.eat.image
channel	numeric for the channel to use (1 for red, 2 for green and 3 for blue)
negatif	apply a transformation to put the data in negatif, needed for white light pictures and for some extracted featuress from the network
correct.baseline	use or not the rolling ball algorithm to correct the baseline
start	starting pixel index
end	stopping pixel index
wm	Width of local window for minimization/maximization
ws	Width of local window for smoothing
plotting	should a plot be display to check the integration
align	boolean, use or not ptw to align the peak to the first sample
...	Arguments to be passed to methods

Author(s)

Dimitri Fichou

Examples

data <- f.read.image(source='www/rTLC_demopicture.JPG',height=128)
## incoming

DimitriF/DLC documentation built on May 27, 2018, 9:04 a.m.