Files in DistanceDevelopment/dsm
Density Surface Modelling of Distance Sampling Data
.Rbuildignore
.Rhistory
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
Clarity.txt
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/all_df_vars.R
R/block.info.per.su.R
R/check.cols.R
R/ddf.model.description.R
R/dead_functions.R
R/dsm-package.R
R/dsm.R
R/dsm_cor.R
R/dsm_var_gam.R
R/dsm_var_movblk.R
R/dsm_var_prop.R
R/dsm_varprop.R
R/dummy_ddf.R
R/generate.ds.uncertainty.R
R/generate.mb.sample.R
R/get_hessian.R
R/handy2.R
R/latlong2km.R
R/make.data.R
R/make.soapgrid.R
R/matrixnotposdef.handler.R
R/obs_exp.R
R/plot.dsm.R
R/plot.dsm.var.R
R/plot_pred_by_term.R
R/predict.dsm.R
R/print.dsm.R
R/print.dsm.var.R
R/print.dsm_varprop.R
R/print.summary.dsm.var.R
R/print.summary.dsm_varprop.R
R/rqgam_check.R
R/set_ddf_par.R
R/summary.dsm.R
R/summary.dsm.var.R
R/summary.dsm_varprop.R
R/trim.var.R
R/varprop_check.R
R/vis_concurvity.R
R/zzz.R
README.md
_pkgdown.yml
data/mexdolphins.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/data_format/dsm-data-formatting.html
docs/articles/data_format/dsm-data-formatting_files/figure-html/length-segs-1.png
docs/articles/data_format/dsm-data-formatting_files/figure-html/plot-check-1.png
docs/articles/data_format/dsm-data-formatting_files/figure-html/unnamed-chunk-4-1.png
docs/articles/data_format/dsm-data-formatting_files/figure-html/unnamed-chunk-6-1.png
docs/articles/data_format/dsm-data-formatting_files/figure-html/unnamed-chunk-7-1.png
docs/articles/data_format/images/dsm_tables.png
docs/articles/index.html
docs/articles/lines_gomex/mexico-analysis.html
docs/articles/lines_gomex/mexico-analysis_files/figure-html/EDA-plots-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/areawithtransects-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm-xy-depth-depth-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm.xy-check-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm.xy-preds-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm.xy.depth-preds-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm.xy.tweedie-check-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm.xy.tweedie-rqcheck-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/dsm.xyvarplot-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/hr-detfct-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/hr-detfct-2.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/projection-compare-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/spatialEDA-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/visgam1-1.png
docs/articles/lines_gomex/mexico-analysis_files/figure-html/visgam5-1.png
docs/authors.html
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
docs/deps/clipboard.js-2.0.11/clipboard.min.js
docs/deps/data-deps.txt
docs/deps/font-awesome-6.4.2/css/all.css
docs/deps/font-awesome-6.4.2/css/all.min.css
docs/deps/font-awesome-6.4.2/css/v4-shims.css
docs/deps/font-awesome-6.4.2/css/v4-shims.min.css
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.ttf
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docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.woff2
docs/deps/font-awesome-6.5.2/css/all.css
docs/deps/font-awesome-6.5.2/css/all.min.css
docs/deps/font-awesome-6.5.2/css/v4-shims.css
docs/deps/font-awesome-6.5.2/css/v4-shims.min.css
docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf
docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2
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docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2
docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf
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docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf
docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/block.info.per.su.html
docs/reference/check.cols.html
docs/reference/dsm-data.html
docs/reference/dsm-package.html
docs/reference/dsm.cor.html
docs/reference/dsm.html
docs/reference/dsm.var.gam.html
docs/reference/dsm.var.movblk.html
docs/reference/dsm.var.prop.html
docs/reference/dsm_cor-1.png
docs/reference/dsm_cor.html
docs/reference/dsm_var_gam.html
docs/reference/dsm_var_movblk.html
docs/reference/dsm_var_prop.html
docs/reference/dsm_varprop.html
docs/reference/dummy_ddf.html
docs/reference/generate.ds.uncertainty.html
docs/reference/generate.mb.sample.html
docs/reference/index.html
docs/reference/latlong2km.html
docs/reference/make.soapgrid.html
docs/reference/mexdolphins.html
docs/reference/obs_exp.html
docs/reference/plot.dsm.html
docs/reference/plot.dsm.var.html
docs/reference/plot_pred_by_term.html
docs/reference/predict.dsm.html
docs/reference/predict.fake_ddf.html
docs/reference/print.dsm.html
docs/reference/print.dsm.var.html
docs/reference/print.dsm_varprop.html
docs/reference/print.summary.dsm.var.html
docs/reference/print.summary.dsm_varprop.html
docs/reference/rqgam.check.html
docs/reference/rqgam_check-1.png
docs/reference/rqgam_check.html
docs/reference/summary.dsm.html
docs/reference/summary.dsm.var.html
docs/reference/summary.dsm_varprop.html
docs/reference/trim.var.html
docs/reference/vis.concurvity.html
docs/reference/vis_concurvity.html
docs/search.json
docs/sitemap.xml
man/block.info.per.su.Rd
man/check.cols.Rd
man/dsm-data.Rd
man/dsm-package.Rd
man/dsm.Rd
man/dsm.cor.Rd
man/dsm.var.gam.Rd
man/dsm.var.movblk.Rd
man/dsm.var.prop.Rd
man/dsm_cor.Rd
man/dsm_var_gam.Rd
man/dsm_var_movblk.Rd
man/dsm_var_prop.Rd
man/dsm_varprop.Rd
man/dummy_ddf.Rd
man/generate.ds.uncertainty.Rd
man/generate.mb.sample.Rd
man/latlong2km.Rd
man/make.soapgrid.Rd
man/mexdolphins.Rd
man/obs_exp.Rd
man/plot.dsm.Rd
man/plot.dsm.var.Rd
man/plot_pred_by_term.Rd
man/predict.dsm.Rd
man/predict.fake_ddf.Rd
man/print.dsm.Rd
man/print.dsm.var.Rd
man/print.dsm_varprop.Rd
man/print.summary.dsm.var.Rd
man/print.summary.dsm_varprop.Rd
man/rqgam.check.Rd
man/rqgam_check.Rd
man/summary.dsm.Rd
man/summary.dsm.var.Rd
man/summary.dsm_varprop.Rd
man/trim.var.Rd
man/vis.concurvity.Rd
man/vis_concurvity.Rd
tests/testthat.R
tests/testthat/test_glm.R
tests/testthat/test_input.R
tests/testthat/test_mex.R
tests/testthat/test_movblk.R
tests/testthat/test_predict.R
tests/testthat/test_vargam.R
vignettes/apa.csl
vignettes/data_format/data/loons.csv
vignettes/data_format/data/ri_coast.dbf
vignettes/data_format/data/ri_coast.prj
vignettes/data_format/data/ri_coast.shp
vignettes/data_format/data/ri_coast.shx
vignettes/data_format/data/ri_transects.dbf
vignettes/data_format/data/ri_transects.prj
vignettes/data_format/data/ri_transects.shp
vignettes/data_format/data/ri_transects.shx
vignettes/data_format/dataformat.bib
vignettes/data_format/dsm-data-formatting.Rmd
vignettes/data_format/images/dsm_tables.png
vignettes/lines_gomex/mexdolph.bib
vignettes/lines_gomex/mexdolphins-extra.rda
vignettes/lines_gomex/mexico-analysis.Rmd
vignettes/lines_gomex/mexico-analysis_cache/html/__packages
vignettes/lines_gomex/mexico-analysis_cache/html/dsm-est-xy_f7ce90728e1e0a8a2c7be5fa1ad1df14.RData
vignettes/lines_gomex/mexico-analysis_cache/html/dsm-est-xy_f7ce90728e1e0a8a2c7be5fa1ad1df14.rdb
vignettes/lines_gomex/mexico-analysis_cache/html/dsm-est-xy_f7ce90728e1e0a8a2c7be5fa1ad1df14.rdx
vignettes/lines_gomex/mexico-analysis_cache/html/dsm.xy-var_bbdf5306672e0c39da16dda38d569b09.RData
vignettes/lines_gomex/mexico-analysis_cache/html/dsm.xy-var_bbdf5306672e0c39da16dda38d569b09.rdb
vignettes/lines_gomex/mexico-analysis_cache/html/dsm.xy-var_bbdf5306672e0c39da16dda38d569b09.rdx
vignettes/lines_gomex/mexico-analysis_cache/html/dsm.xy.depth-varprop_5167f1bda92d12fd839ca98d9c2f748c.RData
vignettes/lines_gomex/mexico-analysis_cache/html/dsm.xy.depth-varprop_5167f1bda92d12fd839ca98d9c2f748c.rdb
vignettes/lines_gomex/mexico-analysis_cache/html/dsm.xy.depth-varprop_5167f1bda92d12fd839ca98d9c2f748c.rdx
vignettes/lines_gomex/mexico-analysis_cache/html/hrcovdf_ad392769502405e6ec6c0fec24ce7bbf.RData
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vignettes/lines_gomex/mexico-analysis_cache/html/soap-fit_8c3e7416b900be0d3cbcf758da720de5.RData
vignettes/lines_gomex/mexico-analysis_cache/html/soap-fit_8c3e7416b900be0d3cbcf758da720de5.rdb
vignettes/lines_gomex/mexico-analysis_cache/html/soap-fit_8c3e7416b900be0d3cbcf758da720de5.rdx
