| AGdata | Association study for American Gut project |
| arcov | Generate autoregressive cov matrix |
| bic.cca | BIC functions for CCA |
| cancor2 | Return cca correlation |
| cca.cor | Re-estimate the canonical correlaiton |
| elnet.cca | Elastic net cca |
| elnet.cca.roc | ROC curve, elnet |
| elnet.cca.simu | Simulation for elastic net cca |
| finals | Summary of simulation results |
| GenStrucData_Count_latent | Generate count data |
| GenStrucData_Count_normal | Generate count data |
| GenStrucData_Normal | Generate normal data using latent variable model |
| GenStrucData_Normal_mis | Generate normal data, misspecification |
| GenStrucData_Normal_oth | Generate normal data, orthogonal direction |
| GenStrucMat | Function to generate structure matrix using ape tree object |
| gscca | Implement gscca model |
| gscca.bic | gscca model selection using bic |
| gscca.permute | Permutation Test |
| gscca.roc | ROC curve, gscca |
| gscca.simu | Simulation for gscca |
| gscca.simu.normal | Simulation for gscca |
| hello | Hello, World! |
| KFold | KFold CV Index |
| Make_edge | Generate edges given tips |
| moav | Moving average |
| normalize | Normalize a random variable |
| roc.simu | Simulate the ROC |
| s0cca | Conduct s0cca |
| s0cca.final | Final s0cca model calculation |
| s0cca.roc | ROC curve, s0cca |
| s0cca_simu | Simulation function for s0cca |
| s0cca.thresh | CV function for s0cca |
| s1cca_roc | ROC curve, s1cca |
| s1cca_simu | Simulation for s1cca |
| sqrt.mat | Calculate Matrix^(-1/2) |
| StrucMat | Generate Structure Matrix in gscca |
| TruePR | TPR and FPR |
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