mcmc_poisson_st: MCMC poisson for spatio-temporal data
In DouglasMesquita/TGMRF: Transformed Gaussian Markov Random Fields

mcmc_poisson_st

R Documentation

MCMC poisson for spatio-temporal data

Description

MCMC for Poisson data using TGMRF

Usage

mcmc_poisson_st(y, X, E, n_reg, n_var, neigh, beta, nu, eps, mu, rho_s,
  rho_t, rho_st, tau, nsim, burnin, thin, type, type_num, mat_type, method,
  tau_beta, mean_beta, eta_nu, psi_nu, ninit, maxpoint, var_beta, var_eps,
  var_log_mu, var_log_nu, var_rho, fix_rho_s, fix_rho_t, fix_rho_st,
  range_rho_s, range_rho_t, range_rho_st, verbose, c_beta, c_eps, c_mu,
  c_nu, c_rho, conj_beta)

Arguments

`y`	Response variable
`X`	Matrix or data.frame of covariates
`E`	Offsets for Poisson data
`n_reg`	Number of regions in study
`n_var`	Number of variables in study
`neigh`	Neighborhood structure of nb class or a neighborhood matrix
`beta`	Vector of the initial values to coeficients vector
`nu`	A Initial value to variance of copula
`eps`	Initial values to eps parameters
`rho_s`	A Initial value to spatial dependence
`rho_t`	A Initial value to temporal dependence
`rho_st`	A Initial value to spatio-temporal dependence
`tau`	Precision parameter vector of MCAR
`nsim`	Number of MCMC iterations
`burnin`	number of discards iterations
`thin`	Lag to collect the observations
`type`	'lognormal', 'lognormal-precision', 'gamma-shape', 'gamma-scale', 'weibull-shape', 'weibull-scale'
`type_num`	A numeric that represent type in .C functions
`mat_type`	car or leroux
`method`	arms or metropolis
`tau_beta`	Prior precision of beta vector
`mean_beta`	Prior mean of beta vector
`eta_nu`	Prior Shape of nu parameter
`psi_nu`	Prior Scale of nu parameter
`ninit`	Number of initial points in ARMS method
`maxpoint`	Maximum number of evaluation a envelope in each iteration
`var_beta`	Variance of beta proposal (metropolis)
`var_eps`	Variance of eps proposal (metropolis)
`var_log_mu`	Variance of log(mu) proposal (metropolis)
`var_rho`	Variance of rho proposal (metropolis)
`fix_rho_s`	Is rho_s fixed?
`fix_rho_t`	Is rho_t fixed?
`fix_rho_st`	Is rho_st fixed?
`range_rho_s`	Range to sample rho_s
`range_rho_t`	Range to sample rho_t
`range_rho_st`	Range to sample rho_st