gopathway: Integrates goana analysis with DataList
In Dudemanguy/RNASeqSuite: Convenient R wrapper of popular RNAseq pipelines designed to simplify data analysis
Description
Usage
Arguments
Examples
Description
Performs a pathway analysis using results from exactTest, glmLRTTest, or glmQLFTest. idAdd must be run first.
Usage
1
gopathway(dl, species, fdr=0.05)
Arguments
dl
A DataList containing results from either the exactTest, glmLRTTest, or glmQLFTest as well as output from idAdd.
species
The species name. Must be a two character identifier. i.e. "Mm" for mouse.
fdr
The cutoff for pathways to be considered significant. The default is 0.05
Examples
1
go <- gopathway(y, species="Mm")
Dudemanguy/RNASeqSuite documentation built on Dec. 5, 2019, 12:45 a.m.
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Description Usage Arguments Examples
Description
Performs a pathway analysis using results from exactTest, glmLRTTest, or glmQLFTest. idAdd must be run first.
Usage
1 | gopathway(dl, species, fdr=0.05)
|
Arguments
dl |
A DataList containing results from either the exactTest, glmLRTTest, or glmQLFTest as well as output from |
species |
The species name. Must be a two character identifier. i.e. "Mm" for mouse. |
fdr |
The cutoff for pathways to be considered significant. The default is 0.05 |
Examples
1 | go <- gopathway(y, species="Mm")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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