idAdd: Adds additional gene annotiations to a DGEList.

In Dudemanguy/RNASeqSuite: Convenient R wrapper of popular RNAseq pipelines designed to simplify data analysis

Description

Adds a column of gene output with its description to the DGEList using geneConvert.

Usage

idAdd(dl, species, input_id, output_id)

Arguments

dl	A DGEList with rownames that are valid gene annotations.
species	The species name. Must be compliant with NCBI names. Shortcut names "mouse", "rat", and "human" are hardcoded as valid alternatives for convenience.
input_id	The valid geneConvert input id for the query. A simplistic search is built into the function.
output_id	The valid geneConvert output id for the query. A simplistic search is built into the function.

Examples

y <- idAdd(y, "mouse", "geneid", c("symbol", "description"))

Dudemanguy/RNASeqSuite documentation built on Dec. 5, 2019, 12:45 a.m.