idAdd: Adds additional gene annotiations to a DGEList.

Description Usage Arguments Examples

View source: R/RNASeqSuite.R

Description

Adds a column of gene output with its description to the DGEList using geneConvert.

Usage

1
idAdd(dl, species, input_id, output_id)

Arguments

dl

A DGEList with rownames that are valid gene annotations.

species

The species name. Must be compliant with NCBI names. Shortcut names "mouse", "rat", and "human" are hardcoded as valid alternatives for convenience.

input_id

The valid geneConvert input id for the query. A simplistic search is built into the function.

output_id

The valid geneConvert output id for the query. A simplistic search is built into the function.

Examples

1
y <- idAdd(y, "mouse", "geneid", c("symbol", "description"))

Dudemanguy/RNASeqSuite documentation built on Dec. 5, 2019, 12:45 a.m.