SplitGroup: SplitGroup

In Durenlab/RegNMF: RegNMF

SplitGroup

Description

Allot cells(barcords) and regulations(peak - gene) to each clusters

Arguments

foldername	output folder
barcord	barcode of cell
W3	W3 in W123H
H	H in W123H
Reg_symbol_name	Gene_name in W123H
Reg_peak_name	peak_name in W123H
cluster

Details

About argument barcord and cluster, should be matched. For example, if there are barcode A, B, C, belong cluster 1, 2, 1, Then argument 'barcode' and 'cluster' should be Vector (A,B,C) and Vector(1,2,1)

Value

barcordFileName	A tsv file contents barcodes with their cluster information
RegFolderName	A folder contents regulations in each cluster as tsv file, will be filtered by peak of each cluster

Author(s)

Cham

Durenlab/RegNMF documentation built on March 19, 2023, 12:27 p.m.