Visualization: Reg Nonnegative Matrix Factorization
In Durenlab/RegNMF: RegNMF

Visualization

R Documentation

Reg Nonnegative Matrix Factorization

Using result of callpeak, polt a Figure contain regulation and peak infomation.

  RgeNMF(wholef,
        peakf,
        regf,
        chr,
        from,
        to,
        clusterlist,
        width=6,
        height=4)

`wholef=in_foldername`	Filtered feature barcode matrix file
`peakf`	Folder contain peak infomation for each cluster
`regf`	Folder contain regulation infomation for each cluster
`chr`	Which chromasome you want to see in the result(ex. "chr16").
`from,to`	Which region of the chromasome you want to see in the result.
`clusterlist`	Vector of cluster names
`width,height`	Figure size of result.