Visualization: Reg Nonnegative Matrix Factorization

Description Usage Arguments Author(s)

Description

Using result of callpeak, polt a Figure contain regulation and peak infomation.

Usage

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  RgeNMF(wholef,
        peakf,
        regf,
        chr,
        from,
        to,
        clusterlist,
        width=6,
        height=4)

Arguments

wholef=in_foldername

Filtered feature barcode matrix file

peakf

Folder contain peak infomation for each cluster

regf

Folder contain regulation infomation for each cluster

chr

Which chromasome you want to see in the result(ex. "chr16").

from,to

Which region of the chromasome you want to see in the result.

clusterlist

Vector of cluster names

width,height

Figure size of result.

Author(s)

Cham, fchang@clemson.edu


Durenlab/scREG documentation built on Dec. 17, 2021, 5:31 p.m.