callpeak: call peak
In Durenlab/scREG: RegNMF
Description
Usage
Arguments
Value
Author(s)
Description
Call for each cluster
Usage
1
callpeak(outfolder,fragment,barcord_cluster_whole,oldRegFolder,macs2path,awkpath,cluster,clusterL)
Arguments
outfolder
result of RegNMF(W123$H)
fragment
fragment path
barcord_cluster_whole
A file contain barcodes and cluster infomation
oldRegFolder
A folder contain predicted regulation for each cluster
macs2path
macs2 path
cluster
Vector of cluster names
clusterL
Number of cluster
Value
peak_clusterF
Folder contain peak infomation for each cluster
RE_clusterF
Folder contain regulation(peak - gene), filtered by peak in each cluster
Author(s)
Cham
Durenlab/scREG documentation built on Dec. 17, 2021, 5:31 p.m.
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Description Usage Arguments Value Author(s)
Description
Call for each cluster
Usage
1 | callpeak(outfolder,fragment,barcord_cluster_whole,oldRegFolder,macs2path,awkpath,cluster,clusterL)
|
Arguments
outfolder |
result of RegNMF(W123$H) |
fragment |
fragment path |
barcord_cluster_whole |
A file contain barcodes and cluster infomation |
oldRegFolder |
A folder contain predicted regulation for each cluster |
macs2path |
macs2 path |
cluster |
Vector of cluster names |
clusterL |
Number of cluster |
Value
peak_clusterF |
Folder contain peak infomation for each cluster |
RE_clusterF |
Folder contain regulation(peak - gene), filtered by peak in each cluster |
Author(s)
Cham
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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