Man pages for ECGen/ComGenR
Functions for COMmunity GENetics analyses in R
| calcDepend | Calculate species dependencies (i.e. conditional... |
| cgImage | Plot a binary representation of a matrix. |
| cgPlotweb | Plot a genotype-community bipartite network. |
| cgSim | Community Genetics simulator using the methods of Shuster et... |
| ch.plot | Cross-hair plotting functions for 2D NMDS plots. |
| CoCo | Generate a vector of co-occurrence counts from an occurrence... |
| ComGenR-package | A toolbox for conducting Community Genetics analyses in R. |
| coStrength | Calculates interaction strength. |
| coSym | Calculates the symmetry of species in a network. |
| cscore | Calculates the C-Score of Stone and Roberts 1991. |
| dep.net | Generates the dependency network from Araujo et al. 2011. |
| getH2C | Calculates the community heritability metric of Shuster et... |
| gpmCom | Community genotype-phenotype mapping function. |
| gpmTrees | Foundation tree species genotype-phenotype mapping function... |
| H2 | Calculates heritability metrics from a range of model output. |
| mdc.plot | Mean based dot chart with error bars. |
| mean.g | Calcualtes the mean for a set of genotype. |
| mgp | Modified graph plotting for network models. |
| min.net | Minimized network function. |
| nullCom | Generate a set of null communities based on functions in the... |
| null.prune | Pruning function for the Araujo et al. 2011 method. |
| pair.permanova | Conduct pairwise PerMANOVAs. |
| R2 | Calculates the R-squared coefficient from a range of model... |
| rel | Relativize a matrix of values. |
| rmTrees | Tree removal simulator. |
| se.g | Calculate the standard error for a set of genotypes. |
| simSpp | Community simulator for running cgSim. |
| simTrees | Tree simulator. |
