cgSim: Community Genetics simulator using the methods of Shuster et...

In ECGen/ComGenR: Functions for COMmunity GENetics analyses in R

Description

Function for simulating the community level effects of genetic variation in a clonal foundation species.

Usage

cgSim(
  trees = "simulated trees",
  insects = "simulated insects",
  z = "selection strength",
  VeT = "tree trait variance",
  Ve = "insect environmental variance",
  VeN = "interaction environmental variance",
  K = "insect carrying capacity",
  k.asym = FALSE,
  k.min = 5,
  k.max = 100,
  cf = "correction factor",
  artpop.only = FALSE
)

Arguments

trees	Matrix of phenotypic values for a set of trees.
insects	Matrix of bi-allelic loci for arthropod species.
z	Selection strength.
VeT	tree trait variance
Ve	insect environmental variance
VeN	interaction environmental variance
K	insect carrying capacity
k.asym	Logical: Should default K be asymptotic?
k.min	Minimum value for K.
k.max	Maximum value for K
cf	Correction factor numerical error in generating species abundances at equilibrium.
artpop.only	FALSE

Author(s)

Matthew K. Lau

Examples

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

ECGen/ComGenR documentation built on July 23, 2021, 11:44 p.m.