filterReplicates: Filter Replicates
In ELELAB/lipidQ: Lipidomics Analysis Tool
Description
Usage
Arguments
Value
Author(s)
View source: R/filterReplicates.R
Description
This function filter replicates for each specie based on a
threshold value
Usage
1
2
filterReplicates(data, userSpecifiedColnames = NULL, numberOfReplicates = 1,
numberOfInstancesThreshold, thresholdValue)
Arguments
data
data formatted by the use of the mergeDataSet function from
LipidQ.
userSpecifiedColnames
the column names template file containing user
specified column names for the input data. This file
numberOfReplicates
the number of replicates for each sample
numberOfInstancesThreshold
the number of replicates for a given sample
that has to have values above the specified threshold value (thesholdValue)
thresholdValue
user specified threshold value based on technical noise
and/or other variation sources. This paramter will determine the threshold in
which a replicate will be considered as having an observed value or not.
Value
a data set filtered by a user specified threshold of pmol between
replicates
Author(s)
André Vidas Olsen
ELELAB/lipidQ documentation built on Feb. 24, 2020, 12:54 a.m.
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Description Usage Arguments Value Author(s)
View source: R/filterReplicates.R
Description
This function filter replicates for each specie based on a threshold value
Usage
1 2 | filterReplicates(data, userSpecifiedColnames = NULL, numberOfReplicates = 1,
numberOfInstancesThreshold, thresholdValue)
|
Arguments
data |
data formatted by the use of the mergeDataSet function from LipidQ. |
userSpecifiedColnames |
the column names template file containing user specified column names for the input data. This file |
numberOfReplicates |
the number of replicates for each sample |
numberOfInstancesThreshold |
the number of replicates for a given sample that has to have values above the specified threshold value (thesholdValue) |
thresholdValue |
user specified threshold value based on technical noise and/or other variation sources. This paramter will determine the threshold in which a replicate will be considered as having an observed value or not. |
Value
a data set filtered by a user specified threshold of pmol between replicates
Author(s)
André Vidas Olsen
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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