Files in EMBL-Hentze-group/DEWSeq
Differential Expressed Windows Based on Negative Binomial Distribution
.Rbuildignore
.gitignore
.gitlab-ci.yml
DESCRIPTION
NAMESPACE
NEWS
R/SLBP_K562_w50s20-data.R
R/extract.R
R/preprocess.R
R/readers.R
R/resultsDEWSeq.R
R/slbpDds.R
R/slbpRegions.R
R/slbpVst.R
R/slbpWindows.R
R/toBED.R
R/topWindow.R
README.md
data/SLBP_K562_w50s20.rda
data/slbpDds.rda
data/slbpRegions.rda
data/slbpVst.rda
data/slbpWindows.rda
inst/CITATION
inst/extdata/SLBP_K562_w50s20_annotation.txt.gz
inst/extdata/SLBP_K562_w50s20_counts.txt.gz
inst/extdata/SLBP_K562_w50s20_max_counts.txt.gz
man/DESeqDataSetFromSlidingWindows.Rd
man/SLBP_K562_w50s20.Rd
man/dot-readAnnotation.Rd
man/extractRegions.Rd
man/filterCounts.Rd
man/resultsDEWSeq.Rd
man/slbpDds.Rd
man/slbpRegions.Rd
man/slbpVst.Rd
man/slbpWindows.Rd
man/toBED.Rd
man/topWindowStats.Rd
tests/testthat.R
tests/testthat/test_DESeqDataSetFromSlidingWindows.R
tests/testthat/test_extractRegions.R
tests/testthat/test_resultsDEWSeq.R
vignettes/DEWSeq.R
vignettes/DEWSeq.Rmd
vignettes/binding_modes.png
vignettes/controls.png
vignettes/crosslinking_chance.png
vignettes/dewseqoverview.png
vignettes/digestionpatterns.png
vignettes/earlytruncation.png
vignettes/htseq-clip.png
vignettes/library.bib
vignettes/overlapping_sliding_windows.png
vignettes/readthrough.png
vignettes/truncation.png
vignettes/truncationsite.png
