Files in EMBL-Hentze-group/DEWSeq

Differential Expressed Windows Based on Negative Binomial Distribution

.Rbuildignore

.gitignore

.gitlab-ci.yml

DESCRIPTION

NAMESPACE

NEWS

R/SLBP_K562_w50s20-data.R R/extract.R R/preprocess.R R/readers.R R/resultsDEWSeq.R R/slbpDds.R R/slbpRegions.R R/slbpVst.R R/slbpWindows.R R/toBED.R R/topWindow.R README.md

data/SLBP_K562_w50s20.rda

data/slbpDds.rda

data/slbpRegions.rda

data/slbpVst.rda

data/slbpWindows.rda

inst/CITATION

inst/extdata/SLBP_K562_w50s20_annotation.txt.gz

inst/extdata/SLBP_K562_w50s20_counts.txt.gz

inst/extdata/SLBP_K562_w50s20_max_counts.txt.gz

man/DESeqDataSetFromSlidingWindows.Rd man/SLBP_K562_w50s20.Rd man/dot-readAnnotation.Rd man/extractRegions.Rd man/filterCounts.Rd man/resultsDEWSeq.Rd man/slbpDds.Rd man/slbpRegions.Rd man/slbpVst.Rd man/slbpWindows.Rd man/toBED.Rd man/topWindowStats.Rd tests/testthat.R tests/testthat/test_DESeqDataSetFromSlidingWindows.R tests/testthat/test_extractRegions.R tests/testthat/test_resultsDEWSeq.R vignettes/DEWSeq.R vignettes/DEWSeq.Rmd

vignettes/binding_modes.png

vignettes/controls.png

vignettes/crosslinking_chance.png

vignettes/dewseqoverview.png

vignettes/digestionpatterns.png

vignettes/earlytruncation.png

vignettes/htseq-clip.png

vignettes/library.bib

vignettes/overlapping_sliding_windows.png

vignettes/readthrough.png

vignettes/truncation.png

vignettes/truncationsite.png

EMBL-Hentze-group/DEWSeq documentation built on Oct. 17, 2023, 10:41 p.m.