EMBL-Hentze-group/DEWSeq
Differential Expressed Windows Based on Negative Binomial Distribution

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EMBL-Hentze-group/DEWSeq: Differential Expressed Windows Based on Negative Binomial Distribution
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Man pages for EMBL-Hentze-group/DEWSeq
Differential Expressed Windows Based on Negative Binomial Distribution

DESeqDataSetFromSlidingWindowscreate DESeq data object
dot-readAnnotationread annotation data
extractRegionsextract significant regions
filterCountsfilter count data
resultsDEWSeqextract DEWseq results
slbpDdsENCODE eCLIP data SLBP in K562
SLBP_K562_w50s20ENCODE eCLIP data for SLBP in K562, low count filtered
slbpRegionsENCODE eCLIP data SLBP in K562
slbpVstENCODE eCLIP data SLBP in K562
slbpWindowsENCODE eCLIP data SLBP in K562
toBEDwindows/regions to BED
topWindowStatsstats for the top windows in each region
EMBL-Hentze-group/DEWSeq documentation built on Oct. 17, 2023, 10:41 p.m.

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