Files in EMSL-Computing/pspecterlib
PSpecteR Library - Visualization tools for top-down and bottom-up proteomics data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/annotated_spectrum_plot.R
R/count_ion_annotations.R
R/coverage_bar_plot.R
R/coverage_lit_seq_plot.R
R/coverage_plot.R
R/error_heatmap_plot.R
R/get_matched_peaks.R
R/get_ms1ft.R
R/get_peak_data.R
R/get_peptide_coverage.R
R/get_protein_table.R
R/get_scan_metadata.R
R/get_xic.R
R/ion_bar_plot.R
R/make_mass_modified_ion.R
R/make_peak_data.R
R/molform_functions.R
R/ms1_plots.R
R/multiple_modifications.R
R/promex_feature_plot.R
R/scan_metadata_plot.R
R/sequence_plot.R
R/utils-pipe.R
R/xic_plot.R
README.md
disclaimer.txt
docs/index.html
inst/CITATION
inst/extdata/Unimod_v20220602.csv
inst/testdata/BU_Match.RDS
inst/testdata/BU_Peak.RDS
inst/testdata/BU_XIC.RDS
inst/testdata/MS1FT.RDS
inst/testdata/PeptideCoverage.RDS
inst/testdata/ProteinTable.RDS
license.txt
man/add_molforms.Rd
man/annotated_spectrum_plot.Rd
man/as.molform.Rd
man/calculate_iso_profile.Rd
man/collapse_molform.Rd
man/convert_proforma.Rd
man/count_ion_annotations.Rd
man/coverage_bar_plot.Rd
man/coverage_lit_seq_plot.Rd
man/coverage_plot.Rd
man/error_heatmap_plot.Rd
man/get_aa_molform.Rd
man/get_matched_peaks.Rd
man/get_monoisotopic.Rd
man/get_ms1ft.Rd
man/get_mw.Rd
man/get_peak_data.Rd
man/get_peptide_coverage.Rd
man/get_protein_table.Rd
man/get_scan_metadata.Rd
man/get_xic.Rd
man/ion_bar_plot.Rd
man/is_sequence.Rd
man/make_mass_modified_ion.Rd
man/make_peak_data.Rd
man/ms1_plots.Rd
man/multiple_modifications.Rd
man/multiply_molforms.Rd
man/pipe.Rd
man/promex_feature_plot.Rd
man/scan_metadata_plot.Rd
man/sequence_plot.Rd
man/xic_plot.Rd
test.txt
tests/.DS_Store
tests/testthat.R
tests/testthat/file_check.R
tests/testthat/test_add_molforms.R
tests/testthat/test_annotated_spectrum_plot.R
tests/testthat/test_count_ion_annotations.R
tests/testthat/test_coverage_bar_plot.R
tests/testthat/test_coverage_lit_seq_plot.R
tests/testthat/test_coverage_plot.R
tests/testthat/test_error_heatmap_plot.R
tests/testthat/test_get_matched_peaks.R
tests/testthat/test_get_ms1ft.R
tests/testthat/test_get_peak_data.R
tests/testthat/test_get_peptide_coverage.R
tests/testthat/test_get_protein_table.R
tests/testthat/test_get_scan_metadata.R
tests/testthat/test_get_xic.R
tests/testthat/test_ion_bar_plot.R
tests/testthat/test_is_sequence.R
tests/testthat/test_make_mass_modified_ion.R
tests/testthat/test_make_peak_data.R
tests/testthat/test_ms1_plots.R
tests/testthat/test_promex_feature_plot.R
tests/testthat/test_scan_metadata_plot.R
tests/testthat/test_sequence_plot.R
tests/testthat/test_xic_plot.R
vignettes/.gitignore
vignettes/PSpecteR Library Demo.Rmd
