In ETHZ-INS/scanMiRData: miRNA Affinity models for the scanMiR package

library(BiocStyle)

The scanMiRData package contains KdModel collections corresponding to all human, mouse and rat mirbase miRNAs. These represent the miRNA binding affinities (or more exactly, dissociation rates) predicted using the CNN from McGeary, Lin et al. (2019). To know more about the KdModel and KdModelList classes, see the corresponding vignette in the scanMiR package.

Loading the collections

The objects can be loaded to the environment using data:

library(scanMiR)
data("mmu", package="scanMiRData")
summary(mmu)
head(mmu)

Alternatively, they can also be loaded (and filtered) through a convenient function:

library(scanMiRData)
mmu <- getKdModels("mmu", categories=c("Conserved across vertebrates", 
                                       "Conserved across mammals"))
summary(mmu)

Summary of the other two collections:

summary(getKdModels("hsa"))
summary(getKdModels("rno"))

Session info {.unnumbered}

sessionInfo()

ETHZ-INS/scanMiRData documentation built on July 20, 2023, 8:04 a.m.