adpCombine: ADCP Combine
In Echisholm21/adp: ADCP Processing

Description Usage Arguments Details See Also

View source: R/adcpToolbox.R View source: R/adpCombine.R

Combines archived data and metadata from raw, odf and netCDF sources into adp object which can be exported as netCDF or saved

1	adpCombine(adp, raw, ncin)

`adp`	an adp object sourced from ODF files using `odf2adp`
`raw`	a raw ADCP file (.000)
`ncin`	an archived netCDF file (.nc)

a) Raw file (.000)

Contains:

Data: heading, pressure, sound speed data, BEAM_02-_04, PGDP_02-_04, PTCH, ROLL, HGHT, Tx, D( D is not actually equal to depth values recorded in raw file but calculated using swDepth from recorded pressure values)

Metadata: firmwareVersion, frequency, beamPattern, orientation, beamAngle, numberOfBeams (janus), pingsPerEnsemble, velocityResolution (pred_accuracy), lowCorrThresh (valid_correlation_range), percentGdMinimum (minmax_percent_good), errorVelocityMaximum (error_velocity_threshold), xmitPulseLength (transmit_pulse_length), falseTargetThresh (false_target_reject_values), serialNumber, instrumentType(data_type), bin1Distance

b) Archived netCDF

Contains:

Data: BEAM_02-_04, PGDP_02-_04, PTCH, ROLL, HGHT, Tx, D ***note this DATA is pulled from the RAW file in case NC file is corrupted or missing

Metadata: creation_date, start_time, stop_time, inst_type, history, , , , transform, data_subtype, coord_system, water_mass, , , , var_fill, experiment, project, descript, data_cmnt, fill_flag, , magnetic_variation, , delta_t_sec, time_between_ping_groups, depth: xducer_offset_from_bottom, depth: bin_size

c) Archived ODFs (series for each mooring)

Contains:

Data: PROCESSED EWCT, NSCT, VCSP, ERRV, BEAM_01 (!which is actually the average echo intensity), PGDP_04, time, distance

Metadata: units (v, distance), cellSize, numberOfBeams, orientation, model, type, serialNumber, ship (platform), scientist (chief_scientist), institute (data_origin), cruise (cruise_name), station (mooring), countryInstituteCode, cruiseNumber, startTime, latitude, longitude, waterDepth, sounding

Other odf: odf2adp

Other NC: adpNC, oceNc_create

Other processing: limit_depthbytime, limit_time, oceNc_create

Echisholm21/adp documentation built on May 20, 2019, 9:12 p.m.