Man pages for Edert/NVT
Normalization visualisation tool
| check_cmethod | Check correlation method |
| check_expression_list | Check expression gene list |
| check_hkgene_list | Check housekeeping gene list |
| check_method | Check normalization method |
| check_norm_list | Check normalized expression gene list |
| exists_hkgene_list | Check if housekeeping gene list is valid |
| myexp1 | List of expression data of each gene |
| myexp2 | List of expression data of each gene |
| mylen | List of length of each gene |
| mylist_hs | List of human housekeeping genes |
| myusecaseexp | Dataframe of expression of six human RNA-Seq samples |
| myusecaselen | List of ensembl human gene-length |
| NVTadvancedmaplot | Plot the MA-plot of a NVTobject with ggplot2 |
| NVTadvancedplot | Plot the XY-plot of a NVTobject with ggplot2 |
| NVT-class | Class "NVTdata" |
| NVTinit | Initialize and load input data into a NVTobject |
| NVTlm | Returns the linear model a normalized NVTobject |
| NVTloadgff | Load a gff2 (gtf) or gff3 file, this may take a while... |
| NVTmae | Calculate the mean absolute error (MAE) of the housekeeping... |
| NVTmaplot | Plot the MA-plot of a NVTobject |
| NVTnormalize | Normalize a NVTobject, the normalization method has been set... |
| NVTpearson | Calculate the pearson correclation of the housekeeping genes... |
| NVTplot | Plot the XY-plot of a NVTobject |
| NVTrmsd | Calculate the root mean squared deviation (RMSD) of the... |
| NVTtestall | Calculate the chosen correclation of the housekeeping genes... |
| show | Show method, to retrieve the normalized expression values |
