NVTpearson: Calculate the pearson correclation of the housekeeping genes...

In Edert/NVT: Normalization visualisation tool

Description

Calculate the pearson correclation of the housekeeping genes of an initialized and normalized NVTobject

Usage

NVTpearson(NVTdataobj)

Arguments

NVTdataobj

A previously initialized and normalized NVTobject

Value

Pearson correlation of the normalized housekeeping genes between the samples

Examples

library("NVT")
data(myexp1)
data(myexp2)
data(mylen)
mylist1<-c("ENSG00000111640","ENSG00000163631","ENSG00000075624","ENSG00000172053",
"ENSG00000165704","ENSG00000196839","ENSG00000168938","ENSG00000177700")

mynvt <- NVTinit(mylist1,myexp1,myexp2,"TMM")
mynorm <- NVTnormalize(mynvt)

NVTpearson(mynorm)

Edert/NVT documentation built on June 25, 2021, 5:46 p.m.