vismclL: vismclL

In Eleven1996/VISMCL: visualization of MCL output files

Description

plot circle packing graph with given filepath, with an extra filter attribute to only print the largest n clusters, will NOT print the processed data frame

Usage

vismclL(filepath, filterN = 0, showName = FALSE, Clusternames = NULL,
  color = "grey", HighlightByName = 0, HighlightFirstN = 0,
  HighlightColor = "chartreuse1")

Arguments

filepath	the filepath of the output file of MCL
filterN	the first n largest clusters will be plotted. if there are more than one cluster with the cutoff size,vismclL will print all of them.
showName	(optional)if shows the name of clusters,default is FALSE
Clusternames	(optional) a vector for user-defined clusternames, order should be the same as the lines go.
color	(optional)A color code:color fill the circle,default is grey
HighlightByName	(optional) a vector of cluster names which user wish to highlight.
HighlightFirstN	(optional) an integer:highlight the first n largest cluster.
HighlightColor	(optional) A color code: color used for highlight, default is green

Value

a circle packing graph representing the information

Examples

cat("a aa\n b bbb b\n",file = "example")
vismclL("example")
vismclL("example",filter=1)
vismclL("example",filter=1,showName=TRUE)

Eleven1996/VISMCL documentation built on May 30, 2019, 11:47 p.m.