vismcl: vismcl

In Eleven1996/VISMCL: visualization of MCL output files

Description

plot circle packing graph with given filepath,recommand vismclL for very large input data

Usage

vismcl(filepath, showName = FALSE, Clusternames = NULL,
  color = "grey", HighlightByName = NULL, HighlightFirstN = 0,
  HighlightColor = "chartreuse1")

Arguments

filepath	the filepath of the output file of MCL
showName	(optional)if shows the name of clusters,default is FALSE
Clusternames	(optional) a vector for user-defined clusternames, order should be the same as the lines go.
color	(optional)A color code:color fill the circle,default is grey
HighlightByName	(optional) a vector of cluster names which user wish to highlight.
HighlightFirstN	(optional) an integer:highlight the first n largest cluster.
HighlightColor	(optional) A color code: color used for highlight, default is green

Value

a circle packing graph representing the information and print the dataframe in the console

Examples

cat("a aa\n b bbb b\n",file = "example")
vismcl("example",showName = TRUE,Clusternames=c("1","2"),color="white",HighlightByName="1",
       HighlightFirstN=1,HighlightColor="red")
vismcl("example")
vismcl("example",showName = TRUE)

Eleven1996/VISMCL documentation built on May 30, 2019, 11:47 p.m.